Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0335FIG00442849 hypothetical protein. (652 aa)    
Predicted Functional Partners:
BF49_3070
ABC transporter ATPbinding protein.
  
  
 
0.914
BF49_0336
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
       0.620
BF49_1255
ABC transporter HlyBMsbA family.
    
 0.577
BF49_2158
Probable RuBisCoexpression protein CbbX.
    
 0.527
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.527
BF49_0333
Lactoylglutathione lyase and related lyases.
 
     0.514
ndvA
Beta12glucan export ATPbindingpermease protein NdvA EC 36342; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
0.472
BF49_0334
FIG00441277 hypothetical protein.
       0.468
BF49_5998
ABCtype multidrug transport system ATPase component.
  
  
 0.450
BF49_0782
Endonuclease.
    
 0.423
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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