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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0355MalylCoA lyase EC 41324; Belongs to the HpcH/HpaI aldolase family. (293 aa)    
Predicted Functional Partners:
BF49_4864
HydroxymethylglutarylCoA lyase EC 4134; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.921
BF49_2777
COGs COG3777.
  
 
 0.787
BF49_4865
MaoClike dehydratase.
 
 
 0.718
BF49_7308
Biphenyl23diol 12dioxygenase IIIrelated protein.
  
  
 0.674
BF49_0670
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
   
    0.659
BF49_1326
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
   
    0.659
BF49_1625
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
   
    0.659
BF49_1764
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
   
    0.659
BF49_5423
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
   
    0.659
mdh
Malate dehydrogenase EC 11137; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.612
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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