Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0393FIG00450577 hypothetical protein. (122 aa)    
Predicted Functional Partners:
BF49_4506
FIG00480737 hypothetical protein.
  
     0.709
BF49_3395
FIG00450379 hypothetical protein.
  
     0.683
BF49_6118
Putative ironsulfur cluster assembly scaffold protein for SUF system SufE2.
  
     0.671
BF49_6909
FIG00451037 hypothetical protein.
 
     0.657
BF49_3043
FIG00444791 hypothetical protein.
  
     0.638
rpmJ
LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.
  
     0.638
BF49_5918
FIG040666 hypothetical protein perhaps implicated in de Novo purine biosynthesis.
  
     0.634
BF49_6982
FIG040666 hypothetical protein perhaps implicated in de Novo purine biosynthesis.
  
     0.628
BF49_2234
COG1896 Predicted hydrolases of HD superfamily.
  
     0.620
BF49_0264
Hypothetical protein.
  
     0.581
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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