STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BF49_0401ATPase component BioM of energizing module of biotin ECF transporter. (394 aa)    
Predicted Functional Partners:
BF49_0338
Succinate dehydrogenase flavoprotein subunit EC 13991; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
    0.760
BF49_5283
Succinate dehydrogenase ironsulfur protein EC 13991.
 
    0.752
BF49_0337
Succinate dehydrogenase ironsulfur protein EC 13991; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
    0.750
BF49_0340
Succinate dehydrogenase cytochrome b556 subunit.
 
   
 0.685
rpsI
SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.
  
   0.659
BF49_0400
25 RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.630
mdh
Malate dehydrogenase EC 11137; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.630
BF49_0406
2oxoglutarate dehydrogenase E1 component EC 1242.
 
   
 0.578
rpsP
SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.
   
   0.575
polA
DNA polymerase I EC 2777; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
   0.566
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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