Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0423Putative periplasmic protein YibQ distant homology with nucleoside diphosphatase and polysaccharide deacetylase. (410 aa)    
Predicted Functional Partners:
BF49_5822
FIG00741759 hypothetical protein.
  
     0.741
BF49_5804
Flagellar protein FlgJ peptidoglycan hydrolase EC 321.
 
     0.735
BF49_3269
FIG00440552 hypothetical protein.
  
     0.725
BF49_0652
FIG01007117 hypothetical protein.
  
     0.720
BF49_0179
Flp pilus assembly protein TadD contains TPR repeat.
 
     0.719
BF49_6085
FIG00983977 hypothetical protein.
  
     0.716
BF49_6122
FIG00439572 hypothetical protein.
  
     0.711
BF49_4214
Type IV prepilin peptidase TadVCpaA.
  
     0.708
BF49_4206
Flp pilus assembly protein TadD contains TPR repeat.
 
     0.704
BF49_7037
Hypothetical protein.
  
     0.696
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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