STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0432Sulfatase family protein EC 313. (544 aa)    
Predicted Functional Partners:
BF49_4442
Nitrite reductase accessory protein NirV.
 
   0.814
BF49_0675
Sulfatase modifying factor 1 precursor Calphaformyglycine generating enzyme 1.
 
   0.758
BF49_4906
Adenylate cyclase EC 4611.
 
   0.742
BF49_5934
Ergothioneine biosynthesis protein EgtB.
  
   0.674
BF49_6971
Hypothetical protein.
  
 0.638
rpoZ
DNAdirected RNA polymerase omega subunit EC 2776; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.591
BF49_0619
ATPDEPENDENT DNA HELICASE.
    
 0.573
BF49_0711
ATPdependent RNA helicase Atu1833; Belongs to the DEAD box helicase family.
    
 0.573
BF49_4223
ATPdependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.573
BF49_6092
ATPdependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.573
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.