STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0474InterPro IPR001687IPR006021 COGs COG1525. (246 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.625
BF49_3972
ATPdependent helicase HrpB.
    
 0.613
BF49_4217
Mll6489 protein.
   
    0.549
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
    0.530
BF49_0473
Serineglyoxylate aminotransferase EC 26145.
       0.527
BF49_0619
ATPDEPENDENT DNA HELICASE.
    
 0.474
BF49_0711
ATPdependent RNA helicase Atu1833; Belongs to the DEAD box helicase family.
    
 0.474
BF49_4223
ATPdependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.474
BF49_6092
ATPdependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.474
BF49_5187
Bll6480 protein.
  
  
  0.470
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.