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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0486LysM domain protein. (355 aa)    
Predicted Functional Partners:
BF49_3611
Hypothetical protein.
  
 
 0.919
BF49_3627
Phage FluMu protein gp47.
  
 
 0.880
BF49_6786
Sporulation related domain.
  
    0.815
BF49_1816
FIG00852950 hypothetical protein.
  
    0.758
BF49_5560
Inosine5monophosphate dehydrogenase EC 111205.
  
 
 0.754
BF49_3624
FIG003269 Prophage tail protein.
  
  
 0.680
BF49_2581
General secretion pathway protein E.
    
 
 0.664
BF49_2580
General secretion pathway protein F.
    
   0.651
BF49_4273
Conserved hypothetical protein hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
    0.633
BF49_2885
Starvation-inducible DNA-binding protein; Nonspecific DNAbinding protein Dps Ironbinding ferritinlike antioxidant protein Ferroxidase EC 11631; Belongs to the Dps family.
   
  
 0.623
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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