Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0497FIG00441656 hypothetical protein. (285 aa)    
Predicted Functional Partners:
BF49_3406
Blr1246 unknown protein.
  
     0.586
BF49_4398
Protein of unknown function DUF882.
  
    0.560
BF49_3407
Blr1245 unknown protein.
  
     0.550
BF49_4103
Betalactamaselike.
  
     0.504
BF49_1838
Sulfopyruvate decarboxylase alpha subunit EC 41179.
  
     0.484
BF49_3442
Rhodaneserelated sulfurtransferase.
 
 
 0.480
BF49_1761
FIG00641944 hypothetical protein.
 
     0.446
BF49_4847
Sulfopyruvate decarboxylase alpha subunit EC 41179.
  
     0.446
BF49_2921
Hypothetical protein.
 
     0.444
BF49_0867
Betalactamaselike.
  
     0.443
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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