Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
acdS1aminocyclopropane1carboxylate deaminase EC 35997; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source; Belongs to the ACC deaminase/D-cysteine desulfhydrase family. (337 aa)    
Predicted Functional Partners:
BF49_0543
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein; Leucineresponsive regulatory protein regulator for leucine or lrp regulon and highaffinity branchedchain amino acid transport system.
 
   
 0.706
BF49_0544
Cysteine synthase EC 25147.
  
 
 0.681
BF49_1416
Aminotransferase class III.
 
  
 0.524
BF49_1782
Adenosylmethionine8amino7oxononanoate aminotransferase EC 26162; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
  0.501
BF49_6691
Blr4874 putative alcohol dehydrogenase EC 1111.
  
     0.487
BF49_5170
tRNA dimethylallyltransferase EC 25175; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
      
 0.473
BF49_6845
Cysteine synthase EC 25147; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.462
BF49_7059
Cysteine synthase B EC 25147.
  
 
 0.462
BF49_1244
Aspartate aminotransferase EC 2611.
     
 0.456
BF49_5673
Glutamate1semialdehyde aminotransferase EC 5438; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.443
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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