Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0552PhbF. (198 aa)    
Predicted Functional Partners:
BF49_0692
Polyhydroxyalkanoic acid synthase.
 
   
 0.835
BF49_5562
Polyhydroxyalkanoic acid synthase.
 
   
 0.814
BF49_1807
Polyhydroxyalkanoic acid synthase.
 
   
 0.724
BF49_7278
Intracellular PHB depolymerase EC 311.
 
   
 0.721
BF49_4942
Polybetahydroxyalkanoate depolymerase.
 
   
 0.699
BF49_6947
Polyhydroxyalkanoic acid synthase.
 
   
 0.651
BF49_0551
Blr0228 hypothetical protein.
       0.642
BF49_0554
AcetoacetylCoA reductase EC 11136.
 
   
 0.621
BF49_0553
AcetylCoA acetyltransferase EC 2319; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.589
BF49_6414
FIG00440041 hypothetical protein.
 
   
 0.583
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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