Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0559FIG00853143 hypothetical protein. (263 aa)    
Predicted Functional Partners:
BF49_6312
FIG00446684 hypothetical protein.
  
     0.736
atpF
ATP synthase F0 sector subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.728
BF49_2293
Znribboncontaining possibly RNAbinding protein and truncated derivatives.
  
     0.713
BF49_2762
FIG00441270 hypothetical protein.
  
     0.645
BF49_5156
FIG00443822 hypothetical protein.
  
     0.636
BF49_3051
FIG00444079 hypothetical protein.
  
     0.622
BF49_3507
FIG01006414 hypothetical protein.
  
     0.621
BF49_6409
FIG00443059 hypothetical protein.
  
     0.621
BF49_5941
FIG00446651 hypothetical protein.
  
     0.615
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.613
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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