Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0571Competence protein F homolog phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy. (241 aa)    
Predicted Functional Partners:
BF49_6474
Rossmann fold nucleotidebinding protein Smf possibly involved in DNA uptake.
 
 
 0.914
BF49_6727
DNA internalizationrelated competence protein ComECRec2.
 
  
 0.876
BF49_0181
MG2 CHELATASE FAMILY PROTEIN ComMrelated protein.
 
  
 0.852
BF49_0569
FIG147869 Carbonnitrogen hydrolase Aliphatic amidase AmiE EC 3514.
     
 0.805
BF49_3262
Cyclohexadienyl dehydrogenase EC 13112EC 13143.
   
  
 0.803
BF49_0568
FIG004851 hypothetical protein.
       0.795
BF49_0570
Glutaredoxin 3 Grx2; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.795
apt
Adenine phosphoribosyltransferase EC 2427; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.760
gpt
Xanthineguanine phosphoribosyltransferase EC 24222; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.760
BF49_4794
Flagellar basalbody rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.750
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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