Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0599Hypothetical protein. (69 aa)    
Predicted Functional Partners:
BF49_0587
Programmed cell death antitoxin MazE like.
  
 0.910
BF49_0145
Nickel responsive regulator NikR; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
  
 
 0.862
BF49_6398
Transcriptional regulator XRE family.
 
  
 0.675
BF49_5105
Protein of unknown function UPF0150.
  
  
 0.671
BF49_2749
Hypothetical protein.
    
 0.627
BF49_0600
Hypothetical protein.
       0.574
BF49_2803
Betapropeller domains of methanol dehydrogenase type.
     
 0.552
BF49_2366
VapB protein antitoxin to VapC; Antitoxin component of a type II toxin-antitoxin (TA) system.
    
 0.549
BF49_2261
Transcriptional regulator HxlR family.
   
    0.503
BF49_3176
Transcriptional regulator HxlR family.
   
    0.503
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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