Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0605Hypothetical protein. (178 aa)    
Predicted Functional Partners:
BF49_0782
Endonuclease.
   
 0.897
BF49_5969
Bll5679 protein.
    
 0.896
BF49_4189
Hypothetical protein.
   
 0.887
BF49_5306
TPR repeat.
  
 0.871
BF49_1577
Metallobetalactamase family protein RNAspecific.
   
 0.858
BF49_3982
mRNA 3end processing factor.
   
 0.858
BF49_1638
Bll3052 protein.
   
 0.856
BF49_3193
Highaffnity carbon uptake protein HatHatR.
   
 0.856
BF49_0603
Aerobic cobaltochelatase CobS subunit EC 6612.
  
    0.796
BF49_2394
FKBPtype peptidylprolyl cistrans isomerase.
   
 0.788
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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