STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0632FIG00439869 hypothetical protein. (254 aa)    
Predicted Functional Partners:
BF49_0631
Putative Zndependent protease.
 
     0.711
BF49_0319
FIG00740902 hypothetical protein.
  
     0.669
BF49_0326
FIG00740902 hypothetical protein.
  
     0.669
BF49_5822
FIG00741759 hypothetical protein.
  
 
 
 0.663
BF49_3269
FIG00440552 hypothetical protein.
  
     0.654
BF49_4508
Flagellar hooklength control protein FliK.
  
     0.651
BF49_4503
Flagellar export protein.
  
     0.649
BF49_2731
Flagellar protein FliJ.
  
     0.629
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.625
BF49_3972
ATPdependent helicase HrpB.
    
 0.613
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.