Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0649Bll0129 hypothetical protein. (123 aa)    
Predicted Functional Partners:
BF49_0650
Putative exported protein.
       0.630
BF49_1806
Hypothetical protein.
 
  
  0.561
BF49_3428
Transcriptional regulator PhnF.
  
  
 0.517
BF49_5332
Histidine utilization repressor.
  
  
 0.517
BF49_3136
Rieske 2Fe2S domain protein.
 
     0.467
BF49_7183
Fosmidomycin resistance protein.
 
     0.464
BF49_4096
Rieske 2Fe2S domain protein.
 
     0.441
BF49_4097
Bll7611 hypothetical protein.
 
  
  0.436
BF49_3137
Bll7611 hypothetical protein.
 
  
  0.418
BF49_3138
Bll7611 hypothetical protein.
 
  
  0.413
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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