Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0651Dihydroorotase. (242 aa)    
Predicted Functional Partners:
BF49_3531
Dihydroorotase.
 
     0.976
pyrB
Aspartate carbamoyltransferase EC 2132; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
  0.954
pyrD
Dihydroorotate dehydrogenase EC 1331; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
  0.948
BF49_6478
Dihydroorotase EC 3523.
  
  
  0.911
BF49_2231
Dihydroorotase EC 3523.
     
  0.900
BF49_0652
FIG01007117 hypothetical protein.
       0.773
BF49_0653
Hypothetical protein.
       0.519
BF49_1090
Type III PLP lowspecificity Dthreonine aldolase.
 
     0.519
BF49_0650
Putative exported protein.
       0.406
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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