Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0692Polyhydroxyalkanoic acid synthase. (600 aa)    
Predicted Functional Partners:
BF49_0554
AcetoacetylCoA reductase EC 11136.
  
 
 0.996
BF49_7278
Intracellular PHB depolymerase EC 311.
 
  
 0.971
BF49_4942
Polybetahydroxyalkanoate depolymerase.
 
  
 0.967
BF49_1807
Polyhydroxyalkanoic acid synthase.
  
  
0.929
BF49_2373
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase; EnoylCoA hydratase EC 42117 3hydroxyacylCoA dehydrogenase EC 11135 3hydroxybutyrylCoA epimerase EC 5123.
     
 0.918
BF49_3997
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase; EnoylCoA hydratase isoleucine degradation EC 42117 3hydroxyacylCoA dehydrogenase EC 11135 3hydroxybutyrylCoA epimerase EC 5123.
     
 0.918
BF49_5562
Polyhydroxyalkanoic acid synthase.
  
  
 
0.913
BF49_0552
PhbF.
 
   
 0.835
BF49_6476
Ferredoxin reductase.
 
   
 0.735
BF49_0693
FIG00442920 hypothetical protein.
  
    0.631
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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