Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0714TfoX domain protein. (151 aa)    
Predicted Functional Partners:
BF49_0715
Iron binding protein SufA for ironsulfur cluster assembly; Belongs to the HesB/IscA family.
       0.649
cobB-2
NADdependent protein deacetylase of SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
   0.648
cobB-3
NADdependent protein deacetylase of SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
   0.648
BF49_7108
NADdependent protein deacetylase of SIR2 family.
   
   0.648
hisA
Phosphoribosylformimino5aminoimidazole carboxamide ribotide isomerase EC 53116.
    
  0.455
BF49_0716
PaaDlike protein DUF59 involved in FeS cluster assembly.
       0.445
BF49_0717
Cysteine desulfurase EC 2817 SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.445
BF49_0718
Ironsulfur cluster assembly protein SufD.
       0.439
BF49_0719
Ironsulfur cluster assembly ATPase protein SufC.
       0.433
hisE
PhosphoribosylATP pyrophosphatase EC 36131.
    
  0.417
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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