Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0760FIG167255 hypothetical protein. (344 aa)    
Predicted Functional Partners:
BF49_0766
NADHubiquinone oxidoreductase 172 kD subunit.
 
   
 0.688
BF49_6557
Outer membrane lipoprotein OmlA.
  
     0.666
BF49_5754
Kinesinlike protein.
  
     0.650
BF49_0319
FIG00740902 hypothetical protein.
  
     0.624
BF49_0326
FIG00740902 hypothetical protein.
  
     0.624
BF49_6099
FIG00440034 hypothetical protein.
  
     0.618
BF49_6066
FIG00451007 hypothetical protein.
  
   
 0.607
BF49_5138
TolA protein.
  
   
 0.601
BF49_0596
FIG003437 hypothetical with DnaJlike domain.
  
     0.584
BF49_0276
FIG000868 Homolog of E coli HemY protein.
  
     0.546
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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