Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_0820Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family. (270 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5phosphate oxidase EC 1435; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
 
  
 0.992
pdxJ
Pyridoxine 5phosphate synthase EC 26992; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
 0.941
BF49_4156
Bll7835 hypothetical protein.
     
  0.894
BF49_0223
Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.780
BF49_3419
Mll0539 protein.
  
  
  0.721
BF49_3956
Mlr2805 protein.
     
  0.676
BF49_4969
FIG00444136 hypothetical protein.
  
  
  0.652
BF49_5039
Transcriptional regulator GntR family domain Aspartate aminotransferase EC 2611.
  
  
 0.635
BF49_5773
Transcriptional regulator GntR family domain Aspartate aminotransferase EC 2611.
  
  
 0.635
BF49_0821
Negative transcriptional regulator.
       0.628
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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