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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0842Hydroxymethylpyrimidine ABC transporter substratebinding component. (338 aa)    
Predicted Functional Partners:
BF49_0844
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 
 0.987
BF49_0848
Hydroxymethylpyrimidine ABC transporter ATPase component.
 
 
 0.812
BF49_1846
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 
 0.784
BF49_3916
Hydroxymethylpyrimidine ABC transporter transmembrane component.
 
 
 0.775
BF49_3521
ABC transporter permease protein with unknown substrate.
 
 
 0.691
BF49_0845
FIG01094124 hypothetical protein.
 
    0.678
BF49_7267
Alkanesulfonates transport system permease protein.
 
 
 0.673
BF49_0847
4hydroxytetrahydrodipicolinate synthase EC 4337; Belongs to the DapA family.
 
     0.655
BF49_0846
Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.640
BF49_0843
Transcriptional regulator TetR family.
 
     0.618
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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