Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0863Blr4188 hypothetical protein. (155 aa)    
Predicted Functional Partners:
BF49_0864
Hypothetical protein.
 
     0.618
BF49_6486
FIG01006953 hypothetical protein.
  
     0.598
BF49_6031
FIG00440817 hypothetical protein.
  
    0.590
BF49_2516
Hypothetical protein.
  
     0.563
BF49_1975
Carboxymuconolactone decarboxylase.
 
     0.526
BF49_2324
FIG00439656 hypothetical protein.
  
     0.518
BF49_7264
FIG00441456 hypothetical protein.
  
     0.512
BF49_2096
RNA polymerase sigma54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.510
BF49_4744
Probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.495
BF49_0884
Blr6985 hypothetical protein.
  
     0.471
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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