Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0893Lipolytic enzyme GDSL family precursor. (247 aa)    
Predicted Functional Partners:
BF49_0680
Tricarboxylate transport protein TctB.
  
     0.651
BF49_5635
Tricarboxylate transport protein TctB.
  
     0.650
BF49_4119
Bll4819 hypothetical protein.
 
     0.617
BF49_4242
Bll4819 hypothetical protein.
 
     0.589
BF49_3674
OpgC protein.
 
     0.546
BF49_7102
OpgC protein.
 
     0.546
BF49_0398
ABC transporter ATPbinding protein YvcR.
   
   0.540
BF49_0894
Shortchain dehydrogenasereductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.538
BF49_0990
FIG003573 hypothetical protein.
  
     0.530
BF49_0114
FIG01006394 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.522
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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