Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0905FIG00444345 hypothetical protein. (266 aa)    
Predicted Functional Partners:
BF49_0906
Predicted transcriptional regulator of pyridoxine metabolism.
 
    0.795
BF49_4949
Nacetylglutamate synthase related protein.
      0.729
BF49_0904
Acetylornithine deacetylase EC 35116.
 
     0.723
mdh
Malate dehydrogenase EC 11137; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.510
BF49_0820
Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.
    
  0.481
pdxJ
Pyridoxine 5phosphate synthase EC 26992; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.464
BF49_0907
Bsl4153 hypothetical protein.
       0.460
BF49_5740
Hydroxymethylpyrimidine phosphate kinase ThiD EC 2747.
    
  0.456
BF49_2933
Llactate dehydrogenase EC 1123.
  
    0.428
BF49_6732
Glycolate oxidase EC 11315.
  
    0.428
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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