Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0912FIG00852389 hypothetical protein. (547 aa)    
Predicted Functional Partners:
BF49_2981
FIG00441988 hypothetical protein.
  
     0.577
BF49_4247
FIG00440318 hypothetical protein.
  
     0.549
BF49_6412
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
    
 0.549
BF49_0913
Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family.
       0.527
BF49_6987
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
    
 0.527
BF49_1264
FIG00442049 hypothetical protein.
  
     0.514
BF49_0911
Conserved uncharacterized protein CreA.
       0.505
BF49_0914
FIG01006880 hypothetical protein.
 
     0.502
BF49_3343
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
    
 0.490
BF49_2910
Bll7395 protein.
  
     0.487
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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