BF49_0935 protein (Bradyrhizobium sp.) - STRING interaction network

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Score

BF49_0935

Cold shock protein CspE. (68 aa)

Predicted Functional Partners:

BF49_3669

0.753

BF49_7107

0.753

BF49_3972

0.695

rpsQ

0.668

rpsL

0.645

rpmC

0.613

rplW

0.608

rnr

0.591

rph

0.567

rpsS

0.564

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0935	BF49_3669	BF49_0935	BF49_3669	Cold shock protein CspE.	Cold shock protein CspB.	0.753
BF49_0935	BF49_3972	BF49_0935	BF49_3972	Cold shock protein CspE.	ATPdependent helicase HrpB.	0.695
BF49_0935	BF49_7107	BF49_0935	BF49_7107	Cold shock protein CspE.	Cold shock protein CspB.	0.753
BF49_0935	rnr	BF49_0935	BF49_6465	Cold shock protein CspE.	3to5 exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.591
BF49_0935	rph	BF49_0935	BF49_0168	Cold shock protein CspE.	Ribonuclease PH EC 27756; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.567
BF49_0935	rplW	BF49_0935	BF49_6232	Cold shock protein CspE.	LSU ribosomal protein L23p L23Ae; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.608
BF49_0935	rpmC	BF49_0935	BF49_6238	Cold shock protein CspE.	LSU ribosomal protein L29p L35e; Belongs to the universal ribosomal protein uL29 family.	0.613
BF49_0935	rpsL	BF49_0935	BF49_6225	Cold shock protein CspE.	SSU ribosomal protein S12p S23e; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.645
BF49_0935	rpsQ	BF49_0935	BF49_6239	Cold shock protein CspE.	SSU ribosomal protein S17p S11e; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.668
BF49_0935	rpsS	BF49_0935	BF49_6234	Cold shock protein CspE.	SSU ribosomal protein S19p S15e; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.564
BF49_3669	BF49_0935	BF49_3669	BF49_0935	Cold shock protein CspB.	Cold shock protein CspE.	0.753
BF49_3669	BF49_3972	BF49_3669	BF49_3972	Cold shock protein CspB.	ATPdependent helicase HrpB.	0.695
BF49_3669	rnr	BF49_3669	BF49_6465	Cold shock protein CspB.	3to5 exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.591
BF49_3669	rph	BF49_3669	BF49_0168	Cold shock protein CspB.	Ribonuclease PH EC 27756; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.567
BF49_3669	rplW	BF49_3669	BF49_6232	Cold shock protein CspB.	LSU ribosomal protein L23p L23Ae; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.608
BF49_3669	rpmC	BF49_3669	BF49_6238	Cold shock protein CspB.	LSU ribosomal protein L29p L35e; Belongs to the universal ribosomal protein uL29 family.	0.613
BF49_3669	rpsL	BF49_3669	BF49_6225	Cold shock protein CspB.	SSU ribosomal protein S12p S23e; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.645
BF49_3669	rpsQ	BF49_3669	BF49_6239	Cold shock protein CspB.	SSU ribosomal protein S17p S11e; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.650
BF49_3669	rpsS	BF49_3669	BF49_6234	Cold shock protein CspB.	SSU ribosomal protein S19p S15e; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.564
BF49_3972	BF49_0935	BF49_3972	BF49_0935	ATPdependent helicase HrpB.	Cold shock protein CspE.	0.695