Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0958Cyclolysin secretion ATPbinding protein. (710 aa)    
Predicted Functional Partners:
BF49_0957
HlyD family secretion protein.
 
 0.993
BF49_4085
HlyD family secretion protein.
 
 0.924
BF49_0959
Alkaline phosphatase EC 3131.
 
 
 0.906
BF49_1658
Type I secretion outer membrane protein TolC precursor.
  
 
 0.783
BF49_7038
Type I secretion outer membrane protein TolC precursor.
  
 
 0.783
BF49_5997
Probable CoZnCd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.767
BF49_6325
Macrolidespecific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.767
BF49_0150
Putative multidrug resistance efflux pump protein.
  
 0.759
BF49_1189
Efflux transporter RND family MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.759
BF49_3569
Hypothetical protein.
  
 0.759
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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