STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_0963FIG000988 Predicted permease. (389 aa)    
Predicted Functional Partners:
BF49_0964
FIG000906 Predicted Permease.
 
 0.999
BF49_0119
ABC transporter ATPbinding protein.
 
 
 0.982
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.944
BF49_6714
UDP23diacylglucosamine pyrophosphatase.
 
     0.736
BF49_1242
Lipid A biosynthesis lauroyl acyltransferase EC 231.
 
   
 0.729
BF49_0120
OstAlike protein.
 
  
 0.707
BF49_3045
Lipid IVA 3deoxyDmannooctulosonic acid transferase EC 249912 often with EC 249913 also; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.657
BF49_3046
Protein of unknown function DUF374.
 
     0.637
lpxB
LipidAdisaccharide synthase EC 241182; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.630
BF49_7075
4amino4deoxyLarabinose transferase and related glycosyltransferases of PMT family.
 
   
 0.628
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.