lptD protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lptD

LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (805 aa)

Predicted Functional Partners:

BF49_0964

0.947

BF49_0963

0.944

BF49_0120

0.942

BF49_0966

0.869

BF49_6738

0.814

BF49_0121

0.782

rsmA

0.778

BF49_0230

0.774

bamA

0.758

BF49_3266

0.741

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0120	BF49_0121	BF49_0120	BF49_0121	OstAlike protein.	FIG00793979 hypothetical protein.	0.987
BF49_0120	BF49_0963	BF49_0120	BF49_0963	OstAlike protein.	FIG000988 Predicted permease.	0.707
BF49_0120	BF49_0964	BF49_0120	BF49_0964	OstAlike protein.	FIG000906 Predicted Permease.	0.702
BF49_0120	BF49_0966	BF49_0120	BF49_0966	OstAlike protein.	Survival protein SurA precursor Peptidylprolyl cistrans isomerase SurA EC 5218.	0.640
BF49_0120	BF49_6738	BF49_0120	BF49_6738	OstAlike protein.	Peptidylprolyl cistrans isomerase PpiD EC 5218.	0.473
BF49_0120	bamA	BF49_0120	BF49_6709	OstAlike protein.	Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.757
BF49_0120	lptD	BF49_0120	BF49_0965	OstAlike protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.942
BF49_0121	BF49_0120	BF49_0121	BF49_0120	FIG00793979 hypothetical protein.	OstAlike protein.	0.987
BF49_0121	BF49_0963	BF49_0121	BF49_0963	FIG00793979 hypothetical protein.	FIG000988 Predicted permease.	0.522
BF49_0121	BF49_0964	BF49_0121	BF49_0964	FIG00793979 hypothetical protein.	FIG000906 Predicted Permease.	0.420
BF49_0121	BF49_3266	BF49_0121	BF49_3266	FIG00793979 hypothetical protein.	FIG00450348 hypothetical protein.	0.461
BF49_0121	lptD	BF49_0121	BF49_0965	FIG00793979 hypothetical protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.782
BF49_0230	BF49_0963	BF49_0230	BF49_0963	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	FIG000988 Predicted permease.	0.506
BF49_0230	BF49_0964	BF49_0230	BF49_0964	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	FIG000906 Predicted Permease.	0.554
BF49_0230	bamA	BF49_0230	BF49_6709	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.510
BF49_0230	lptD	BF49_0230	BF49_0965	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.774
BF49_0963	BF49_0120	BF49_0963	BF49_0120	FIG000988 Predicted permease.	OstAlike protein.	0.707
BF49_0963	BF49_0121	BF49_0963	BF49_0121	FIG000988 Predicted permease.	FIG00793979 hypothetical protein.	0.522
BF49_0963	BF49_0230	BF49_0963	BF49_0230	FIG000988 Predicted permease.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.506
BF49_0963	BF49_0964	BF49_0963	BF49_0964	FIG000988 Predicted permease.	FIG000906 Predicted Permease.	0.999