Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1002Gfalike protein. (122 aa)    
Predicted Functional Partners:
BF49_4365
PhnB protein putative DNA binding 3demethylubiquinone9 3methyltransferase domain protein.
  
    0.725
BF49_1001
FIG00441995 hypothetical protein.
       0.536
BF49_6142
Gfalike protein.
 
   
 0.485
BF49_1160
Protein of unknown function DUF1428.
 
    0.441
BF49_5993
Gfalike protein.
 
   
 0.432
BF49_1054
Gfalike protein.
 
   
 0.422
BF49_4089
Alcohol dehydrogenase EC 1111.
    
 0.422
BF49_5355
Shydroxymethylglutathione dehydrogenase EC 111284; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.422
BF49_5361
Shydroxymethylglutathione dehydrogenase EC 111284.
    
 0.422
BF49_6619
Gfalike protein.
 
   
 0.421
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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