Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1005Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors. (689 aa)    
Predicted Functional Partners:
BF49_1006
Periplasmic sugarbinding domain protein.
       0.785
BF49_0859
FIG00439631 hypothetical protein.
 
   
 0.652
BF49_7310
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
   
 0.640
BF49_3110
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.606
BF49_7235
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.583
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 
 0.524
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.485
BF49_5131
Response regulator.
 
   
 0.460
BF49_1446
Sensory box histidine kinaseresponse regulator.
 
  
 0.456
BF49_0222
Phytochromelike protein Cph2.
 
 
0.455
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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