Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1048FIG00455493 hypothetical protein. (128 aa)    
Predicted Functional Partners:
BF49_1047
Histone acetyltransferase HPA2 and related acetyltransferases.
       0.596
BF49_1680
Putative transmembrane antisigma factor.
  
     0.500
BF49_2521
Glucosemethanolcholine GMC oxidoreductaseNAD binding site.
 
  
  0.451
BF49_1046
Hypothetical protein.
       0.444
BF49_0677
FIG00983575 hypothetical protein.
  
     0.442
BF49_2935
FIG00443663 hypothetical protein.
  
     0.431
BF49_0823
Omethyltransferase EC 211.
 
     0.428
BF49_3169
Probable signal peptide protein.
  
     0.426
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
    
  0.423
BF49_2934
Hypothetical protein.
  
     0.417
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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