Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1049Oxalateformate antiporter. (406 aa)    
Predicted Functional Partners:
BF49_2070
Blr1018 hypothetical protein.
  
     0.748
BF49_0730
Major facilitator superfamily.
  
   
0.535
BF49_5122
Permeases of the major facilitator superfamily.
  
   
0.533
BF49_1104
MFS permease.
  
   
0.518
BF49_2237
Bll2549 hypothetical protein.
  
     0.509
BF49_1050
COG0553 Superfamily II DNARNA helicases SNF2 family.
       0.414
BF49_5308
Alphabeta hydrolase fold.
  
     0.405
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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