Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1057Aha1 domain protein. (220 aa)    
Predicted Functional Partners:
BF49_1056
Transcriptional regulator ArsR family.
  
 0.927
BF49_1058
Uncharacterized protein ygiV.
       0.535
BF49_3458
Styrene monooxygenase subunit A.
  
     0.525
BF49_4973
COGs COG0840.
 
     0.503
BF49_1907
FIG00440739 hypothetical protein.
 
     0.478
BF49_4371
PhnB protein.
 
     0.460
BF49_5896
Hypothetical protein.
  
     0.456
BF49_5904
Hypothetical protein.
  
     0.456
BF49_5857
Bll5781 protein.
  
     0.421
BF49_5043
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family.
 
     0.412
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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