Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1060FIG00794925 hypothetical protein; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
BF49_1064
Mlr5283 protein.
 
     0.693
BF49_4155
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
BF49_6524
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.614
BF49_3117
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.560
BF49_1061
AcetoacetylCoA reductase EC 11136.
 
     0.511
BF49_6128
FIG00441633 hypothetical protein.
  
     0.488
BF49_1063
Ketosteroid isomeraserelated protein.
 
     0.443
BF49_1910
Chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
  
     0.441
BF49_1062
3oxoacylacylcarrier protein reductase EC 111100.
 
     0.439
BF49_4058
FIG00793732 hypothetical protein.
  
     0.423
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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