Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_1086Possible hypoxanthine oxidase XdhD EC 1. (790 aa)    
Predicted Functional Partners:
BF49_2712
Xanthine dehydrogenase YagT iron-sulfur-binding subunit; Periplasmic aromatic aldehyde oxidoreductase ironsulfur subunit YagT 4hydroxybenzoylCoA reductase gamma subunit EC 139920.
 0.977
BF49_5984
Carbon monoxide dehydrogenase small chain EC 12992.
 0.974
BF49_4858
Carbon monoxide dehydrogenase small chain EC 12992.
 0.932
BF49_0511
Carbon monoxide dehydrogenase small chain EC 12992.
 0.912
BF49_0509
Carbon monoxide dehydrogenase medium chain EC 12992.
 
 0.897
BF49_4860
Carbon monoxide dehydrogenase medium chain EC 12992.
 
 0.897
BF49_5985
Carbon monoxide dehydrogenase medium chain EC 12992.
 
 0.897
BF49_5582
Isoquinoline 1oxidoreductase alpha subunit EC 139916.
 0.888
BF49_1366
4hydroxybenzoylCoA reductase gamma subunit EC 139920.
 0.883
BF49_5353
Isoquinoline 1oxidoreductase alpha subunit EC 139916.
 
 0.868
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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