Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1088Bll3966 protein; Belongs to the UPF0178 family. (165 aa)    
Predicted Functional Partners:
BF49_1089
ABC transporter ATPbinding protein.
       0.839
BF49_1090
Type III PLP lowspecificity Dthreonine aldolase.
       0.638
BF49_1087
FIG00442322 hypothetical protein.
       0.535
BF49_1091
FIG00439747 hypothetical protein.
 
     0.409
BF49_3025
Hypothetical protein YaeJ with similarity to translation release factor.
 
   
 0.403
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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