Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
BF49_1090Type III PLP lowspecificity Dthreonine aldolase. (359 aa)    
Predicted Functional Partners:
BF49_1089
ABC transporter ATPbinding protein.
       0.644
BF49_1088
Bll3966 protein; Belongs to the UPF0178 family.
       0.638
BF49_1282
Transcriptional regulator GntR family domain Aspartate aminotransferase EC 2611.
  
 
  0.555
BF49_2764
Threonine synthase EC 4231.
 
  
  0.535
BF49_0906
Predicted transcriptional regulator of pyridoxine metabolism.
  
 
  0.530
BF49_0651
Dihydroorotase.
 
     0.519
BF49_5564
FIG00440890 hypothetical protein.
   
    0.502
BF49_2839
FIG00442497 hypothetical protein.
 
   
 0.497
BF49_1111
Cysteine desulfurase EC 2817.
  
  
  0.485
BF49_3531
Dihydroorotase.
 
     0.482
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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