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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1105Carbohydrateselective porin. (458 aa)    
Predicted Functional Partners:
BF49_4392
Hypothetical protein.
  
     0.691
BF49_1106
Magnesium and cobalt transport protein CorA.
       0.690
BF49_4705
Carbohydrateselective porin OprB.
  
  
 
0.575
BF49_3875
Carbohydrateselective porin OprB.
  
  
 
0.574
BF49_6501
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.565
BF49_6574
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.565
BF49_2009
Hypothetical protein.
  
     0.560
BF49_2016
Hypothetical protein.
  
     0.560
BF49_5180
FIG00439865 hypothetical protein.
  
     0.559
BF49_3911
Possible outer membrane protein.
     
 0.545
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.