Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1117Circadian clock protein KaiC. (504 aa)    
Predicted Functional Partners:
BF49_1116
Sensory box sensor histidine kinaseresponse regulator EC 273.
 
     0.851
BF49_0756
Twocomponent sensor histidine kinase.
   
 
 0.817
BF49_2142
Twocomponent hybrid sensor and regulator.
 
   
 0.624
BF49_0997
Replicative DNA helicase EC 361; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
     
 0.493
BF49_6376
Cyclasedehydrase.
  
     0.483
BF49_1118
Choline dehydrogenase EC 11991.
       0.430
BF49_5298
Betaxylosidase EC 32137.
  
     0.413
BF49_1933
Major facilitator superfamily protein.
  
     0.401
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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