Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1118Choline dehydrogenase EC 11991. (565 aa)    
Predicted Functional Partners:
BF49_4189
Hypothetical protein.
    
 0.678
BF49_1638
Bll3052 protein.
    
  0.514
BF49_3193
Highaffnity carbon uptake protein HatHatR.
    
  0.514
BF49_0432
Sulfatase family protein EC 313.
    
 0.512
BF49_1280
Similar to flavohemoprotein.
    
 0.502
BF49_2412
Flavodoxin reductases ferredoxinNADPH reductases family 1 Vanillate Odemethylase oxidoreductase EC 11413.
    
 0.499
BF49_1961
FIG00442423 hypothetical protein.
 
 0.444
BF49_1116
Sensory box sensor histidine kinaseresponse regulator EC 273.
       0.430
BF49_1117
Circadian clock protein KaiC.
       0.430
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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