Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1122TRAP transporter solute receptor TAXI family precursor unknown substrate 2. (388 aa)    
Predicted Functional Partners:
BF49_1123
TRAP transporter 4TM12TM fusion protein unknown substrate 2.
 
 
 0.994
BF49_3360
TRAP transporter 4TM12TM fusion protein unknown substrate 1.
 
 
 0.809
glsA
Glutaminase EC 3512; Belongs to the glutaminase family.
       0.605
BF49_1120
Transcriptional regulator IclR family.
 
     0.561
BF49_1121
Biotin carboxyl carrier protein.
  
    0.559
BF49_3359
DUF1850 domaincontaining protein.
 
 
  0.555
BF49_4912
FIG00443450 hypothetical protein.
  
     0.540
BF49_4170
Transcriptional regulator IclR family.
  
     0.528
BF49_7154
Signal transduction histidine kinase.
  
  
  0.449
BF49_4753
Hypothetical protein.
  
     0.436
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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