Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1129FIG01005004 hypothetical protein; Belongs to the CoA-transferase III family. (407 aa)    
Predicted Functional Partners:
BF49_1128
3ketoacylCoA thiolase EC 23116.
  
 
  0.803
BF49_1127
FIG00441514 hypothetical protein.
       0.785
BF49_1131
3ketoacylCoA thiolase EC 23116; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.584
BF49_3227
3hydroxyacylCoA dehydrogenase isoleucine degradation EC 11135; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.543
BF49_4143
Shortchain dehydrogenasereductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.543
BF49_1634
MethylmalonylCoA mutase EC 54992.
    
 0.528
BF49_1637
MethylmalonylCoA mutase EC 54992.
    
 0.528
BF49_0554
AcetoacetylCoA reductase EC 11136.
    
  0.513
BF49_1130
Hypothetical protein.
       0.507
BF49_2375
ButyrylCoA dehydrogenase EC 13992.
  
 
 0.506
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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