Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1149Ironuptake factor PiuC. (229 aa)    
Predicted Functional Partners:
BF49_1150
Ferrichromeiron receptor.
 
  
 0.988
BF49_1147
Biopolymer transport protein ExbDTolR.
  
    0.880
BF49_1148
MotATolQExbB proton channel family protein.
  
  
 0.853
BF49_1420
Outer membrane vitamin B12 receptor BtuB.
 
  
 0.845
BF49_1146
Ferric siderophore transport system periplasmic binding protein TonB.
 
    0.780
BF49_1151
FIG00440334 hypothetical protein.
       0.513
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
    0.507
BF49_4380
Tol biopolymer transport system TolR protein.
  
    0.459
BF49_7006
TonBdependent receptor Outer membrane receptor for ferrienterochelin and colicins.
 
    0.427
BF49_3445
Ferrichromeiron receptor.
 
    0.404
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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