Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1160Protein of unknown function DUF1428. (120 aa)    
Predicted Functional Partners:
BF49_3301
Dodecin COG3360 Flavinbinding.
   
    0.571
BF49_0490
Possible asmA protein precursor.
   
    0.569
BF49_4439
AsmA family protein.
   
    0.569
BF49_5138
TolA protein.
   
    0.569
BF49_1159
Highaffinity leucinespecific transport system periplasmic binding protein LivK TC 3A141.
       0.455
BF49_1002
Gfalike protein.
 
    0.441
BF49_2390
3demethylubiquinone9 3methyltransferase.
 
     0.429
BF49_4365
PhnB protein putative DNA binding 3demethylubiquinone9 3methyltransferase domain protein.
 
    0.429
BF49_5107
Bsl6560 hypothetical protein.
   
    0.402
BF49_5929
FIG01006708 hypothetical protein.
   
    0.402
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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