Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1194Cytosine deaminase EC 3541. (413 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase EC 2429; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.972
upp-2
Uracil phosphoribosyltransferase EC 2429; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.972
BF49_3913
Creatinine amidohydrolase EC 35210.
 
  
 0.929
BF49_1575
Thymidine phosphorylase EC 2424.
    
 0.927
BF49_6761
Cytosine deaminase EC 3541.
    
 0.920
BF49_1417
Nmethylhydantoinase B EC 35214.
     
  0.919
BF49_4351
Nmethylhydantoinase B EC 35214.
     
  0.919
BF49_1418
Nmethylhydantoinase A EC 35214.
     
  0.907
BF49_4350
Nmethylhydantoinase A EC 35214.
     
  0.907
BF49_1193
Putative inner membrane protein.
 
   
 0.706
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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