Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1221FIG00440100 hypothetical protein. (194 aa)    
Predicted Functional Partners:
BF49_1222
FIG00845751 hypothetical protein.
 
     0.952
BF49_1223
6hydroxynicotinate reductase EC 1371.
 
     0.952
BF49_1220
Branchedchain amino acidbinding protein.
 
     0.885
BF49_1219
Branchedchain amino acid transport system permease protein LivM TC 3A141; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.813
BF49_1213
Adenine deaminase EC 3542.
 
     0.800
BF49_1216
Transcriptional regulator MarR family.
 
     0.794
BF49_1218
Branchedchain amino acid transport ATPbinding protein LivG TC 3A141.
 
     0.671
BF49_1217
Branchedchain amino acid transport ATPbinding protein LivF TC 3A141.
 
     0.634
BF49_1226
Isoquinoline 1oxidoreductase beta subunit EC 139916.
 
     0.596
BF49_1224
Hypothetical protein.
       0.509
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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