Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_1236FIG00446866 hypothetical protein. (196 aa)    
Predicted Functional Partners:
BF49_2729
FIG111991 hypothetical protein.
  
     0.488
BF49_1235
Hypothetical protein.
       0.476
BF49_4682
Osmosensitive K channel histidine kinase KdpD EC 273.
  
     0.475
BF49_0851
Hypothetical protein.
  
     0.421
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
     0.417
BF49_2928
FIG00444156 hypothetical protein.
  
     0.410
BF49_3445
Ferrichromeiron receptor.
  
     0.405
BF49_6012
FIG00440991 hypothetical protein.
  
     0.403
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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